genome.fa.s21185.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021185.1 Corchorus olitorius cultivar O-4 contig21218, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  215013

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1458--1555	27	3.6	27	90	0	142	38	22	19	19	1.93
2790--2818	10	2.9	10	100	0	58	20	10	17	51	1.74
4930--4960	2	16.0	2	93	6	55	48	0	0	51	1.00
20644--20701	10	6.4	9	72	21	50	72	3	12	12	1.24
20657--20695	16	2.4	17	86	4	53	76	2	10	10	1.10
22277--22420	76	1.9	76	81	5	175	18	28	29	24	1.98
30205--30295	27	3.4	27	92	0	137	38	24	18	18	1.93
36185--36219	8	4.2	8	92	3	52	85	8	0	5	0.73
36832--36980	50	3.0	50	84	3	192	33	15	14	36	1.87
37261--37334	26	2.8	27	72	22	68	52	16	21	9	1.71
37523--37706	50	3.7	50	88	0	278	28	29	15	26	1.96
37722--37917	35	5.6	35	93	0	293	31	19	19	29	1.96
41908--41950	20	2.2	20	100	0	86	48	30	9	11	1.71
43798--43825	12	2.3	12	100	0	56	50	0	7	42	1.30
46551--46666	35	3.3	35	85	7	164	34	19	18	26	1.96
71189--71435	50	4.9	50	91	2	397	18	19	21	40	1.92
72766--72836	27	2.6	27	90	0	115	35	28	19	16	1.94
73766--73928	87	1.9	85	84	5	220	42	4	16	36	1.70
74252--74913	327	2.0	328	92	1	1121	29	21	21	27	1.98
77324--77464	76	1.9	76	83	5	187	17	28	26	26	1.98
81509--81543	18	1.9	18	94	0	61	34	37	0	28	1.58
83567--83672	55	1.9	55	100	0	212	23	16	28	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91692--91731	20	2.0	20	95	0	71	25	7	20	47	1.75
92785--92851	35	1.9	35	93	0	116	28	8	26	35	1.87
100994--101033	13	3.1	13	85	0	53	45	15	15	25	1.84
101026--101056	11	2.8	11	90	0	53	32	9	22	35	1.87
101494--101523	15	1.9	16	93	6	53	20	6	10	63	1.47
101561--101671	40	2.7	41	77	5	109	38	16	10	34	1.83
102947--103007	27	2.3	26	84	15	81	60	4	31	3	1.34
107389--107431	21	2.0	22	86	4	61	20	27	16	34	1.94
112390--112541	50	3.0	51	83	5	191	33	19	15	31	1.93
113173--113629	69	6.7	69	91	1	670	27	28	15	27	1.96
116215--116258	22	2.0	22	86	0	61	18	43	2	36	1.63
120232--120264	11	3.0	11	100	0	66	9	0	36	54	1.32
124379--124414	19	1.9	18	88	5	54	27	22	8	41	1.82
126901--126976	22	3.4	22	83	1	89	21	23	13	42	1.88
127502--127549	25	2.0	24	87	4	69	16	33	35	14	1.89
132757--132785	6	5.0	6	91	8	51	82	0	17	0	0.66
134290--134325	19	1.9	18	88	5	54	27	22	8	41	1.82
137748--137787	21	1.9	21	89	0	62	40	15	30	15	1.87
141776--141802	11	2.5	11	100	0	54	40	14	11	33	1.82
143816--143930	37	3.2	36	90	7	171	11	23	10	54	1.66
143818--143942	36	3.5	36	82	13	143	11	24	10	53	1.67
153848--154423	69	8.3	69	91	0	873	26	30	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154353--154541	105	1.8	105	82	4	247	28	28	15	28	1.96
154953--155030	27	2.9	27	86	3	104	19	17	23	39	1.92
159062--159094	16	2.1	16	94	0	57	39	9	12	39	1.74
164780--165007	59	3.8	59	78	7	246	43	17	18	20	1.88
164891--165147	140	1.8	139	89	0	406	41	14	18	25	1.89
165099--165392	64	4.6	64	93	0	498	42	16	15	25	1.88
166931--167040	51	2.2	51	80	11	120	20	24	11	43	1.85
168090--168154	27	2.4	27	92	5	105	16	21	26	35	1.95
172316--172344	14	2.1	14	93	6	51	48	6	6	37	1.57
172445--172525	30	2.6	31	86	7	103	49	9	19	20	1.77
185131--185179	21	2.3	21	82	6	55	40	16	28	14	1.87
190149--190205	29	1.9	30	85	3	80	57	10	17	14	1.64
193524--193559	2	18.0	2	88	11	56	47	2	0	50	1.15
194255--194524	50	5.4	50	91	0	416	37	11	25	25	1.90
194332--194465	27	5.3	27	62	13	86	35	12	26	24	1.92
194510--194584	26	2.8	26	76	4	69	38	12	28	21	1.89
194797--194861	27	2.4	27	92	0	103	13	20	27	38	1.90
197881--198380	242	2.1	241	94	0	883	29	8	19	43	1.80
199274--199302	14	2.1	14	93	6	51	48	6	6	37	1.57
199400--199483	30	2.7	31	83	7	91	50	10	19	20	1.77
203131--203172	22	1.9	22	95	0	75	11	57	21	9	1.63
204082--204129	24	2.0	25	87	4	71	14	8	4	72	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
206380--206420	18	2.3	18	80	16	50	7	12	7	73	1.25
207395--207538	76	1.9	76	81	5	175	27	28	25	18	1.98
209694--209742	21	2.3	21	82	6	55	40	16	28	14	1.87
214719--214768	26	1.9	26	87	0	73	54	12	20	14	1.71

Tables:   1

The End!