Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021189.1 Corchorus olitorius cultivar O-4 contig21222, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2244
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:486 original size:16 final size:16

Alignment explanation


    Indices: 465--508  Score: 56
    Period size: 16  Copynumber: 2.8  Consensus size: 16

        455 AATCCTCCCT

                             
        465 CACACTACACAGC-ACA
          1 CACACTACACA-CTACA

                     *      
        481 CACACTACATACTACA
          1 CACACTACACACTACA

                         
        497 CACAC-ACACACT
          1 CACACTACACACT

        509 TAAGGGGATC


Statistics
Matches: 25,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  15    7  0.28
  16   18  0.72

ACGTcount: A:0.43, C:0.43, G:0.02, T:0.11


Consensus pattern (16 bp):   
CACACTACACACTACA
Done.