Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021191.1 Corchorus olitorius cultivar O-4 contig21224, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 898

Length: 1498
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.21


Found at i:881 original size:16 final size:16

Alignment explanation


    Indices: 860--900  Score: 50
    Period size: 16  Copynumber: 2.6  Consensus size: 16

        850 CCTCCCTCAA

                             
        860 ACTACACAGC-ACACAC
          1 ACTACACA-CTACACAC

                  *         
        876 ACTACATACTACACAC
          1 ACTACACACTACACAC

                      
        892 AC-ACACACT
          1 ACTACACACT

        901 TAAGGGGATC


Statistics
Matches: 22,  Mismatches: 2, Indels: 3
        0.81            0.07        0.11

Matches are distributed among these distances:
  15    7  0.32
  16   15  0.68

ACGTcount: A:0.44, C:0.41, G:0.02, T:0.12


Consensus pattern (16 bp):   
ACTACACACTACACAC
Done.