Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021192.1 Corchorus olitorius cultivar O-4 contig21225, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15035
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:3885 original size:27 final size:28

Alignment explanation


    Indices: 3847--3918  Score: 76
    Period size: 27  Copynumber: 2.6  Consensus size: 28

       3837 TGGACTTAAT

                  *                   * 
       3847 ATGACCGAAATGCCCCTGA-ATATGCGA
          1 ATGACCAAAATGCCCCTGAGATATGCAA

                         *      * *     
       3874 ATGACCAAAATGCTCCT-AGGTGTGCAA
          1 ATGACCAAAATGCCCCTGAGATATGCAA

                  *           
       3901 ATGACCCAAATGCCCCTG
          1 ATGACCAAAATGCCCCTG

       3919 GATTACCCTA


Statistics
Matches: 36,  Mismatches: 7, Indels: 3
        0.78            0.15        0.07

Matches are distributed among these distances:
  26    1  0.03
  27   35  0.97

ACGTcount: A:0.32, C:0.28, G:0.21, T:0.19


Consensus pattern (28 bp):   
ATGACCAAAATGCCCCTGAGATATGCAA

Found at i:6402 original size:3 final size:3

Alignment explanation


    Indices: 6394--6424  Score: 62
    Period size: 3  Copynumber: 10.3  Consensus size: 3

       6384 GAGGAGTAGG

                                                     
       6394 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
          1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A

       6425 TTAGATCTAG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   28  1.00

ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00


Consensus pattern (3 bp):   
AGA

Done.