Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021195.1 Corchorus olitorius cultivar O-4 contig21228, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 842

Length: 1404
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30


Found at i:1022 original size:13 final size:13

Alignment explanation


    Indices: 1004--1028  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        994 TTTTTCCCAC

                         
       1004 CTTAAAATTATTG
          1 CTTAAAATTATTG

                        
       1017 CTTAAAATTATT
          1 CTTAAAATTATT

       1029 TTTTGGCAAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.40, C:0.08, G:0.04, T:0.48


Consensus pattern (13 bp):   
CTTAAAATTATTG
Done.