Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021196.1 Corchorus olitorius cultivar O-4 contig21229, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62191

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
908--951
18
2.4
18
76
0
52
43
0
4
52
1.22
2298--2399
51
2.0
50
83
9
127
21
23
13
41
1.89
3261--3313
13
4.2
13
79
20
51
75
13
7
3
1.15
4551--4664
57
2.0
57
100
0
228
31
14
19
35
1.91
5813--5896
39
2.1
39
80
10
91
34
5
42
16
1.73
21497--21930
161
2.7
160
83
3
507
37
19
25
17
1.94
21498--21944
40
11.1
40
83
4
438
36
19
25
18
1.94
24146--24196
17
3.0
17
77
5
59
35
5
35
23
1.79
32737--32769
15
2.2
15
94
0
57
36
30
18
15
1.91
35870--35925
29
1.9
29
85
7
78
23
12
16
48
1.80
51473--51622
43
3.5
44
87
2
205
57
5
21
16
1.58

Tables:   1

The End!