Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021197.1 Corchorus olitorius cultivar O-4 contig21230, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3635
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39


Found at i:2088 original size:44 final size:44

Alignment explanation


    Indices: 2031--2120  Score: 171
    Period size: 44  Copynumber: 2.0  Consensus size: 44

       2021 TCTTGGATTC

                                 *                      
       2031 TTGAGATTTACGAATATTGTATAGATTATACATGTATAATTCTA
          1 TTGAGATTTACGAATATTGTACAGATTATACATGTATAATTCTA

                                                        
       2075 TTGAGATTTACGAATATTGTACAGATTATACATGTATAATTCTA
          1 TTGAGATTTACGAATATTGTACAGATTATACATGTATAATTCTA

              
       2119 TT
          1 TT

       2121 TTGTTAACCC


Statistics
Matches: 45,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  44   45  1.00

ACGTcount: A:0.36, C:0.08, G:0.13, T:0.43


Consensus pattern (44 bp):   
TTGAGATTTACGAATATTGTACAGATTATACATGTATAATTCTA
Done.