Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021206.1 Corchorus olitorius cultivar O-4 contig21239, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9820
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30


Found at i:2767 original size:31 final size:31

Alignment explanation


    Indices: 2724--2785  Score: 106
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       2714 TCGGTCAATG

                *              *           
       2724 CTAAGTGTAATAATGAGTTTAAAGTTTTTTT
          1 CTAAATGTAATAATGAGTTGAAAGTTTTTTT

                                           
       2755 CTAAATGTAATAATGAGTTGAAAGTTTTTTT
          1 CTAAATGTAATAATGAGTTGAAAGTTTTTTT

       2786 TTTATGATCT


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  31   29  1.00

ACGTcount: A:0.34, C:0.03, G:0.16, T:0.47


Consensus pattern (31 bp):   
CTAAATGTAATAATGAGTTGAAAGTTTTTTT
Done.