Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021208.1 Corchorus olitorius cultivar O-4 contig21241, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106508

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1087--1160
29
2.5
30
73
6
78
44
25
12
17
1.83
2804--2907
31
3.4
30
75
7
104
34
13
21
30
1.92
15344--15413
36
1.9
36
88
0
104
22
10
8
58
1.57
15937--16345
199
2.0
198
91
3
624
44
8
10
36
1.70
16417--16463
25
1.9
24
91
4
76
55
6
6
31
1.51
18761--18793
17
1.9
17
100
0
66
48
24
6
21
1.72
30860--30909
26
2.0
25
92
4
82
46
0
0
54
1.00
30867--30934
24
2.9
24
71
10
68
48
0
1
50
1.10
30863--30930
35
1.9
35
85
5
93
48
0
1
50
1.10
30811--30933
26
4.6
26
67
23
76
46
0
3
49
1.23
30800--30974
85
2.1
81
91
6
280
43
1
4
50
1.30
31699--31723
7
3.6
7
100
0
50
16
0
12
72
1.13
32864--32922
31
1.9
31
89
6
93
33
18
15
32
1.92
33088--33117
14
2.1
14
93
0
51
66
3
0
30
1.07
35294--35357
8
7.8
8
78
3
65
20
1
4
73
1.09
35294--35357
16
3.9
16
85
2
83
20
1
4
73
1.09
35919--36074
40
3.9
40
73
9
113
46
16
14
21
1.83
40717--40801
27
3.1
27
91
0
134
34
28
18
18
1.95
45617--45776
74
2.1
75
90
5
261
37
15
26
20
1.92
49425--49544
60
2.0
60
93
0
204
31
19
25
24
1.98
50841--50867
7
3.9
7
100
0
54
14
29
25
29
1.95
51975--52104
45
2.9
45
94
2
217
21
11
17
49
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54050--54080
6
5.0
6
96
4
53
0
48
19
32
1.49
68948--68998
21
2.5
21
96
3
95
47
11
3
37
1.59
70686--70727
22
1.9
22
90
0
66
42
28
16
11
1.84
71837--72132
150
2.0
150
97
0
565
32
14
15
36
1.89
80558--80881
40
7.8
40
77
11
274
18
25
20
35
1.95
80503--80882
86
4.5
86
81
7
416
18
25
19
35
1.95
82072--82174
41
2.5
41
80
1
118
22
9
12
55
1.66
88439--88481
22
1.9
22
86
13
61
48
2
0
48
1.14
88608--88879
137
2.0
137
96
0
499
19
37
25
18
1.94
98277--98327
17
3.2
17
68
21
56
29
11
15
43
1.82

Tables:   1

The End!