Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021210.1 Corchorus olitorius cultivar O-4 contig21243, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34956

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5401--5436
18
1.9
18
88
5
54
36
22
2
38
1.69
10423--10488
33
2.1
31
88
5
96
25
9
7
57
1.56
10479--10585
30
3.6
31
71
12
82
42
15
2
38
1.62
12318--12353
18
1.9
18
88
5
54
36
22
2
38
1.69
13924--13956
17
1.9
17
93
0
57
84
12
0
3
0.72
14604--14751
50
3.0
50
92
0
242
33
14
14
37
1.87
15167--15547
91
4.3
88
91
1
548
31
19
12
36
1.89
15167--15547
179
2.1
176
87
3
548
31
19
12
36
1.89
15634--15874
50
4.7
50
87
2
329
30
28
12
28
1.93
16411--16486
28
2.7
27
86
6
89
18
18
26
36
1.94
16393--16486
27
3.4
27
82
4
107
18
18
26
37
1.93
17079--17114
19
1.9
18
88
5
54
41
8
22
27
1.82
24286--24349
22
2.9
23
81
6
78
48
12
20
18
1.80
25995--26031
18
2.1
18
89
0
56
45
5
10
37
1.62
28411--28440
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!