Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021211.1 Corchorus olitorius cultivar O-4 contig21244, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28231

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2564--2641
29
2.8
29
80
3
88
43
24
12
19
1.86
2928--2983
21
2.7
22
78
10
64
30
19
10
39
1.86
5870--5899
14
2.1
14
93
0
51
83
3
13
0
0.77
5870--5898
13
2.1
14
93
6
51
82
3
13
0
0.79
7612--7666
21
2.6
21
77
5
58
23
5
7
63
1.41
8097--8246
50
3.0
49
84
5
194
44
9
8
38
1.66
9854--10208
182
1.9
183
88
1
532
44
15
17
22
1.86
10313--10609
158
1.9
158
89
0
468
42
21
11
24
1.86
10835--10891
22
2.6
22
94
0
105
36
33
10
19
1.86
14391--14437
24
2.0
24
86
0
67
27
2
51
19
1.58
23554--23610
28
2.0
28
82
3
69
1
12
14
71
1.21
24270--24309
15
2.6
16
92
4
64
65
12
10
12
1.49
25068--25094
12
2.2
12
100
0
54
70
7
14
7
1.32

Tables:   1

The End!