Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021212.1 Corchorus olitorius cultivar O-4 contig21245, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19922

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
220--273
27
2.0
27
89
7
83
51
11
1
35
1.48
707--746
15
2.6
16
92
4
64
65
12
10
12
1.49
7270--7311
21
2.0
21
86
9
59
23
9
21
45
1.81
7437--7504
34
2.0
34
97
0
127
41
13
26
19
1.88
10640--10715
21
3.6
21
82
3
91
22
51
19
6
1.70
14784--14939
81
1.9
82
84
9
210
25
18
14
41
1.88
14782--14939
42
3.8
42
77
9
148
25
18
13
41
1.88
15519--15616
49
2.0
48
96
2
178
51
8
12
28
1.68
16972--17004
17
1.9
17
93
0
57
75
9
0
15
1.03
17684--17730
2
23.5
2
95
0
85
48
48
0
2
1.13
18775--18814
21
1.9
21
94
0
71
25
37
22
15
1.93
18847--18888
21
2.0
21
100
0
84
23
38
19
19
1.93
18776--18960
71
2.6
71
90
0
280
31
28
21
18
1.97

Tables:   1

The End!