Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021224.1 Corchorus olitorius cultivar O-4 contig21257, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 980

Length: 1634
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32


Found at i:1281 original size:21 final size:21

Alignment explanation


    Indices: 1255--1366  Score: 183
    Period size: 21  Copynumber: 5.3  Consensus size: 21

       1245 TGCTAGGAGT

                                  
       1255 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                                 
       1276 TCATTGGAGAAGGTTCCAAGC
          1 TCATTGGAGAAGGTTCCAAGC

                             *    
       1297 TCATTGGAG-AGAGTTCAAAGC
          1 TCATTGGAGAAG-GTTCCAAGC

                                 
       1318 TCATTGGAGAAGGTTCCAAGC
          1 TCATTGGAGAAGGTTCCAAGC

                                 
       1339 TCATTGGAGAAGGTTCCAAGC
          1 TCATTGGAGAAGGTTCCAAGC

                   
       1360 TCATTGG
          1 TCATTGG

       1367 TTCCATTGAA


Statistics
Matches: 86,  Mismatches: 2, Indels: 6
        0.91            0.02        0.06

Matches are distributed among these distances:
  20    4  0.05
  21   80  0.93
  22    2  0.02

ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTCCAAGC

Done.