Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021227.1 Corchorus olitorius cultivar O-4 contig21260, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90364

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
541--583
21
2.0
21
90
0
68
27
18
18
34
1.95
726--805
39
2.1
39
92
0
133
43
17
11
27
1.83
6423--6451
15
2.0
15
93
6
51
0
17
0
82
0.66
10124--10163
20
2.0
20
85
0
53
67
2
0
30
1.04
10124--10167
15
3.0
14
83
9
52
63
2
0
34
1.07
10138--10167
15
2.1
15
93
6
53
63
0
0
36
0.95
14468--14633
31
5.4
31
85
0
197
22
23
21
32
1.98
19696--19737
20
2.1
20
100
0
84
57
28
4
9
1.51
20070--20103
14
2.4
14
90
0
50
11
5
11
70
1.32
20968--21010
21
2.0
21
100
0
86
30
4
13
51
1.62
21161--21210
10
4.6
11
79
20
61
82
0
18
0
0.68
21163--21207
15
3.1
15
84
12
58
84
0
15
0
0.62
21161--21212
18
2.9
18
81
13
63
80
0
19
0
0.71
23338--23431
45
2.2
43
88
7
138
39
22
4
34
1.74
23770--23885
54
2.1
54
93
0
196
34
20
7
37
1.82
27324--27367
16
2.8
16
92
0
79
11
6
25
56
1.58
28639--28793
77
2.0
77
93
0
265
52
19
8
19
1.70
28919--29765
438
1.9
437
83
4
1107
26
13
18
41
1.87
30802--30932
59
2.3
56
83
7
158
34
13
16
35
1.89
31651--31762
53
2.1
53
94
0
197
24
8
16
50
1.72
32089--32149
30
2.0
30
93
0
104
26
18
6
49
1.71
32099--32137
20
2.0
20
84
0
51
28
15
5
51
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40729--40782
27
2.0
27
100
0
108
48
18
22
11
1.79
42275--42315
21
2.0
21
85
0
55
17
26
29
26
1.97
43801--43859
17
3.3
17
68
13
55
37
15
13
33
1.86
43801--43925
37
3.3
37
90
7
196
34
15
14
36
1.88
43829--43884
17
3.0
20
66
15
55
33
17
14
33
1.90
43812--43871
17
3.4
17
69
13
57
38
11
18
31
1.87
43819--43925
41
2.7
40
90
5
157
33
15
14
35
1.89
44162--44199
19
2.0
19
94
0
67
28
36
0
34
1.58
46030--46123
30
3.1
30
92
0
152
17
40
3
39
1.65
52758--52785
14
2.0
14
100
0
56
50
7
14
28
1.69
63944--63987
23
1.9
23
90
0
70
40
25
20
13
1.89
64334--64360
8
3.4
8
100
0
54
22
0
25
51
1.48
67978--68012
18
1.9
18
94
0
61
65
14
5
14
1.44
67994--68052
24
2.5
24
97
0
109
59
13
8
18
1.59
69065--69155
15
6.1
15
84
0
92
20
31
30
16
1.95
69086--69155
30
2.3
30
97
0
131
20
34
32
12
1.90
69347--69400
24
2.2
24
90
0
81
20
42
7
29
1.79
81145--81207
28
2.1
28
83
13
74
26
19
14
39
1.90
83986--84066
22
3.7
22
83
1
110
43
11
6
39
1.65
83986--84088
43
2.4
44
88
1
145
42
12
6
37
1.70
83986--84110
65
1.9
64
80
9
146
43
12
6
37
1.69
86269--86328
22
2.7
21
85
10
75
48
3
5
43
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89277--89325
23
2.1
23
81
7
55
46
8
14
30
1.73

Tables:   1

The End!