Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021230.1 Corchorus olitorius cultivar O-4 contig21263, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60359

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7204--7263
14
4.1
14
74
16
59
38
8
0
53
1.31
7241--7334
44
2.1
44
84
0
116
40
9
2
47
1.48
7308--7395
17
5.6
17
80
15
109
40
10
0
48
1.37
7265--7395
61
2.1
61
87
0
181
41
9
1
47
1.46
7326--7430
44
2.4
44
90
1
158
40
9
0
50
1.35
7233--7430
105
1.9
104
84
3
263
40
9
1
48
1.42
8009--8048
21
2.0
21
85
5
55
12
5
27
55
1.58
11379--11411
17
1.9
17
88
11
50
60
0
0
39
0.97
12513--12551
17
2.4
16
83
8
51
15
15
28
41
1.87
17459--17487
14
2.1
14
100
0
58
31
27
27
13
1.94
31718--31813
48
2.0
47
90
6
149
52
1
17
29
1.52
36785--36847
30
2.1
30
91
5
101
30
17
33
19
1.95
43774--43817
15
2.9
15
89
0
61
13
11
34
40
1.81
43780--43838
30
2.0
30
86
0
82
10
8
37
44
1.69
43795--43832
15
2.5
15
91
0
58
5
7
39
47
1.55
46079--46178
15
6.7
15
90
0
146
32
34
10
24
1.88
46079--46178
45
2.2
45
92
0
164
32
34
10
24
1.88
46359--46404
18
2.6
18
89
0
65
17
43
6
32
1.75
46797--46864
33
2.0
34
83
8
86
57
14
4
23
1.56
46971--47023
26
2.0
28
92
7
92
67
20
1
9
1.28
47001--47036
15
2.5
15
90
4
56
69
16
0
13
1.19
49940--49968
11
2.7
11
94
5
51
72
0
0
27
0.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53380--53466
41
2.2
40
85
2
111
20
16
19
43
1.88

Tables:   1

The End!