Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: AWUE01021232.1 Corchorus olitorius cultivar O-4 contig21265, whole genome shotgun sequence Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 6860 ACGTcount: A:0.26, C:0.19, G:0.21, T:0.35 Found at i:3581 original size:2 final size:2 Alignment explanation
Indices: 3574--3600 Score: 54 Period size: 2 Copynumber: 13.5 Consensus size: 2 3564 TCTTTTACAC 3574 TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA T 3601 TAACCGGCCA Statistics Matches: 25, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 25 1.00 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (2 bp): TA Found at i:6379 original size:22 final size:22 Alignment explanation
Indices: 6337--6379 Score: 52 Period size: 22 Copynumber: 2.0 Consensus size: 22 6327 TTTCTAATTA ** 6337 ATTGTTTTCTTTAATTTTCTTG 1 ATTGTTTTCTTTAATAGTCTTG 6359 ATTGTTTTC-TTAGATAGTCTT 1 ATTGTTTTCTTTA-ATAGTCTT 6380 AATTACTAGT Statistics Matches: 18, Mismatches: 2, Indels: 2 0.82 0.09 0.09 Matches are distributed among these distances: 21 3 0.17 22 15 0.83 ACGTcount: A:0.16, C:0.09, G:0.12, T:0.63 Consensus pattern (22 bp): ATTGTTTTCTTTAATAGTCTTG Done.