Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021236.1 Corchorus olitorius cultivar O-4 contig21269, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 21184
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33


Found at i:20182 original size:13 final size:13

Alignment explanation


    Indices: 20166--20190  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

      20156 TATTAAAACC

                         
      20166 ATTAATAAAACAT
          1 ATTAATAAAACAT

                        
      20179 ATTAATAAAACA
          1 ATTAATAAAACA

      20191 GTAATAAAAT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28


Consensus pattern (13 bp):   
ATTAATAAAACAT
Done.