Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021243.1 Corchorus olitorius cultivar O-4 contig21276, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5706
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29


Found at i:3962 original size:22 final size:22

Alignment explanation


    Indices: 3937--3984  Score: 62
    Period size: 22  Copynumber: 2.2  Consensus size: 22

       3927 GACTTCAAGT

                *                  
       3937 GAAGGAATTAATCAACT-AAGAG
          1 GAAGAAATT-ATCAACTCAAGAG

                     *            
       3959 GAAGAAATTTTCAACTCAAGAG
          1 GAAGAAATTATCAACTCAAGAG

                
       3981 GAAG
          1 GAAG

       3985 CAAACCGTTG


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  21    6  0.26
  22   17  0.74

ACGTcount: A:0.48, C:0.10, G:0.23, T:0.19


Consensus pattern (22 bp):   
GAAGAAATTATCAACTCAAGAG
Done.