Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021246.1 Corchorus olitorius cultivar O-4 contig21279, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3004
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34


Found at i:1976 original size:29 final size:27

Alignment explanation


    Indices: 1921--1972  Score: 86
    Period size: 27  Copynumber: 1.9  Consensus size: 27

       1911 TAAAATATCT

                      *                
       1921 TTATATGTTAGAGGGGGCTAATTTTAA
          1 TTATATGTTAAAGGGGGCTAATTTTAA

                             *       
       1948 TTATATGTTAAAGGGGGGTAATTTT
          1 TTATATGTTAAAGGGGGCTAATTTT

       1973 TTAAAATCTC


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  27   23  1.00

ACGTcount: A:0.29, C:0.02, G:0.27, T:0.42


Consensus pattern (27 bp):   
TTATATGTTAAAGGGGGCTAATTTTAA
Done.