Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021247.1 Corchorus olitorius cultivar O-4 contig21280, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3696
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34


Found at i:510 original size:21 final size:22

Alignment explanation


    Indices: 486--526  Score: 57
    Period size: 21  Copynumber: 1.9  Consensus size: 22

        476 GTTTATAATA

                *                 
        486 TTCTTGGGTCA-TCAGGTTATC
          1 TTCTCGGGTCATTCAGGTTATC

                     *          
        507 TTCTCGGGTTATTCAGGTTA
          1 TTCTCGGGTCATTCAGGTTA

        527 CGAGTTTGTC


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21    9  0.53
  22    8  0.47

ACGTcount: A:0.15, C:0.17, G:0.24, T:0.44


Consensus pattern (22 bp):   
TTCTCGGGTCATTCAGGTTATC
Done.