Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021248.1 Corchorus olitorius cultivar O-4 contig21281, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71125

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5360--5459
31
3.3
31
74
13
84
44
16
23
17
1.87
5550--5641
30
3.1
31
84
4
100
39
10
26
23
1.88
8121--8145
12
2.1
12
100
0
50
56
8
0
36
1.29
16191--16228
3
12.7
3
100
0
76
34
0
31
34
1.58
18890--19285
178
2.2
179
82
3
474
35
13
15
36
1.86
20631--20690
29
2.1
29
81
3
68
38
6
15
40
1.73
21020--21045
13
2.0
13
100
0
52
30
15
7
46
1.74
22694--22779
40
2.2
40
93
0
145
24
27
13
33
1.94
29190--29283
29
3.1
28
83
10
116
39
1
0
59
1.04
29193--29282
6
15.3
6
80
4
85
40
1
0
58
1.05
30356--30415
25
2.4
25
83
10
70
11
41
18
28
1.85
30473--30516
22
2.0
22
95
0
79
18
29
13
38
1.89
31194--31248
21
2.8
19
81
10
65
27
7
23
41
1.80
31720--31779
31
1.9
31
93
0
102
55
3
15
26
1.56
33587--33618
13
2.5
13
94
0
55
53
15
6
25
1.65
34686--34723
19
2.0
19
85
10
51
0
23
0
76
0.79
34671--34728
21
2.7
21
78
10
64
1
20
1
75
0.97
34821--34849
12
2.4
12
100
0
58
13
31
37
17
1.89
34807--34915
41
2.7
41
85
7
134
11
34
36
16
1.86
34921--34965
21
2.1
21
83
0
54
0
28
0
71
0.87
39731--39772
15
2.7
15
92
3
66
64
14
9
11
1.50
47564--47783
118
1.9
118
89
0
341
41
14
24
19
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47966--48201
125
1.9
125
88
1
357
40
15
25
19
1.90
48705--48762
21
2.8
21
78
0
62
22
32
3
41
1.71
49753--49808
21
2.8
19
83
5
67
37
17
8
35
1.82
49774--49810
19
1.9
19
94
0
65
35
13
13
37
1.84
65768--65812
2
22.5
2
91
8
74
0
46
2
51
1.13
66960--67000
18
2.2
19
91
4
66
63
4
19
12
1.46
67943--67990
6
7.5
6
84
11
51
35
10
0
54
1.35
67947--67991
14
3.3
14
81
15
58
37
8
0
53
1.32
67938--67990
20
2.7
20
88
5
72
35
9
0
54
1.33
68269--68351
30
3.0
27
81
10
103
40
2
3
53
1.32

Tables:   1

The End!