Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021251.1 Corchorus olitorius cultivar O-4 contig21284, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44199

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
266--312
23
2.0
23
84
8
60
48
4
23
23
1.68
5468--5497
11
2.7
11
89
0
51
86
0
3
10
0.67
6163--6190
2
14.0
2
100
0
56
50
50
0
0
1.00
9217--9316
41
2.4
41
80
3
112
46
15
14
25
1.82
11697--11732
14
2.5
15
86
4
56
0
0
16
83
0.65
14127--14159
17
1.9
17
93
0
57
63
15
3
18
1.43
14953--15180
93
2.5
93
79
9
277
41
13
13
31
1.83
19135--19253
55
2.2
55
98
0
229
27
1
21
49
1.59
22196--22221
13
2.0
13
100
0
52
53
30
0
15
1.42
23735--23776
22
2.0
21
82
13
52
38
11
7
42
1.69
36089--36150
30
2.1
30
96
0
115
19
30
11
38
1.87
36531--36615
3
27.0
3
86
13
86
69
0
29
1
0.96
36556--36600
4
12.5
4
95
4
55
73
0
26
0
0.84
37829--37859
2
15.5
2
100
0
62
51
0
48
0
1.00
39028--39097
31
2.3
30
74
16
74
41
15
25
17
1.89
40479--40506
14
2.0
14
100
0
56
21
28
7
42
1.79
40797--40967
54
3.1
54
95
2
299
33
22
9
34
1.86
43969--43998
8
3.8
8
100
0
60
63
23
0
13
1.29

Tables:   1

The End!