Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021254.1 Corchorus olitorius cultivar O-4 contig21287, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57163

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4853--4955
29
3.7
28
87
5
147
42
21
16
19
1.89
9094--9135
17
2.5
17
80
7
50
16
9
16
57
1.65
15008--15159
76
2.0
76
81
7
175
17
28
28
25
1.97
16346--16386
21
2.0
21
100
0
82
31
14
24
29
1.95
17412--17441
10
2.8
11
90
10
53
83
0
0
16
0.65
19758--19811
19
2.6
21
77
19
60
38
3
18
38
1.69
28423--28512
46
2.0
45
81
16
105
52
14
8
24
1.70
28841--28880
15
2.6
16
88
4
55
62
12
10
15
1.54
37912--37956
2
22.5
2
100
0
90
48
0
0
51
1.00
42044--42120
38
2.0
38
92
0
127
24
7
14
53
1.67
44326--44377
23
2.3
23
84
12
72
53
9
7
28
1.61
45530--45599
2
33.5
2
79
13
63
42
2
5
48
1.41
48415--48474
27
2.4
24
74
15
66
45
18
13
23
1.84
51766--51825
30
2.0
30
87
6
86
31
21
8
38
1.83

Tables:   1

The End!