Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021255.1 Corchorus olitorius cultivar O-4 contig21288, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5889

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2733--3003
41
6.4
41
75
9
224
38
27
11
22
1.88
2733--2980
43
5.9
41
77
11
218
38
27
11
22
1.89
2733--3019
84
3.4
82
84
9
334
38
27
11
22
1.89
5072--5116
20
2.2
20
92
0
72
55
8
20
15
1.66
5046--5234
68
2.8
68
90
0
279
47
19
20
13
1.82
5140--5186
20
2.3
20
88
0
76
63
10
10
14
1.51
5167--5354
48
3.9
48
90
2
288
44
22
21
11
1.84
5369--5637
40
6.7
40
80
9
271
37
21
26
15
1.93
5343--5637
81
3.6
81
90
3
432
36
20
27
15
1.93
5653--5714
31
2.0
31
87
0
88
40
22
24
12
1.89
5738--5888
46
3.4
46
85
3
202
33
19
29
17
1.95

Tables:   1

The End!