Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021262.1 Corchorus olitorius cultivar O-4 contig21295, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37290

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1728--1840
58
1.9
58
83
3
147
33
13
19
33
1.90
3109--3178
36
1.9
36
91
0
113
21
10
8
60
1.55
3691--4099
203
2.0
201
95
1
739
43
8
11
36
1.71
4209--4289
39
2.0
40
97
2
155
37
2
7
53
1.43
4506--4541
6
5.7
6
90
9
54
50
0
13
36
1.43
4506--4541
13
2.8
12
91
4
54
50
0
13
36
1.43
12618--12735
58
2.0
58
96
0
218
44
16
11
27
1.82
12885--13087
31
6.5
31
89
0
226
31
23
24
20
1.98
12899--13071
93
1.9
93
87
0
256
33
22
23
20
1.97
32390--32429
20
2.0
20
95
0
71
17
20
17
45
1.86
34063--34110
24
2.0
24
91
0
78
54
0
16
29
1.43
34608--34650
18
2.4
19
88
7
63
53
20
9
16
1.70

Tables:   1

The End!