Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021263.1 Corchorus olitorius cultivar O-4 contig21296, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3513
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31


Found at i:2583 original size:63 final size:63

Alignment explanation


    Indices: 2484--2602  Score: 204
    Period size: 63  Copynumber: 1.9  Consensus size: 63

       2474 TGTCATGTTC

                           *                                                
       2484 AGGTACTTTTAACTTTAGACACTTCAAATTAGCAAATGATAGTT-GTAAATCATCCACATATGG
          1 AGGTACTTTTAACTTCAGACACTTCAAATTAGCAAATGATAGTTGGT-AATCATCCACATATGG

                                                    *               
       2547 AGGTACTTTTAACTTCAGACACTTCAAATTAGCAAATGATTGTTGGTAATCATCCA
          1 AGGTACTTTTAACTTCAGACACTTCAAATTAGCAAATGATAGTTGGTAATCATCCA

       2603 GCAATGCAGG


Statistics
Matches: 53,  Mismatches: 2, Indels: 2
        0.93            0.04        0.04

Matches are distributed among these distances:
  63   51  0.96
  64    2  0.04

ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34


Consensus pattern (63 bp):   
AGGTACTTTTAACTTCAGACACTTCAAATTAGCAAATGATAGTTGGTAATCATCCACATATGG
Done.