Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021264.1 Corchorus olitorius cultivar O-4 contig21297, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101607

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2935--2965
2
15.0
2
93
6
53
48
3
0
48
1.17
5285--5321
2
18.5
2
100
0
74
48
0
0
51
1.00
8945--8976
14
2.3
14
100
0
64
50
6
18
25
1.70
14246--14279
16
2.1
16
88
0
50
52
0
8
38
1.33
16294--16332
20
2.0
20
89
0
60
51
10
0
38
1.36
17117--17164
24
2.0
24
95
0
87
31
4
22
41
1.73
29839--29867
2
14.5
2
100
0
58
51
0
0
48
1.00
32035--32068
13
2.6
13
90
0
59
5
14
5
73
1.21
32117--32245
56
2.2
59
83
5
165
6
37
38
17
1.75
32117--32245
30
4.4
30
80
6
149
6
37
38
17
1.75
32290--32370
26
3.0
26
89
7
110
4
27
44
23
1.74
42930--42982
10
4.9
11
80
15
58
45
1
1
50
1.23
42930--42985
11
5.1
12
81
14
52
44
1
3
50
1.29
45478--45510
15
2.2
15
94
0
57
39
18
18
24
1.92
50507--50552
22
2.0
24
91
8
78
4
36
43
15
1.66
54605--54655
18
2.8
18
100
0
102
27
17
21
33
1.96
55476--55503
2
14.0
2
100
0
56
50
0
0
50
1.00
56781--56829
2
25.5
2
87
8
75
0
0
46
53
1.00
58125--58165
3
13.7
3
100
0
82
34
0
0
65
0.93
59212--59241
3
10.0
3
100
0
60
33
0
0
66
0.92
66096--66198
51
2.0
51
96
0
188
25
13
29
32
1.94
69273--69356
42
2.0
43
83
9
109
23
20
21
34
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69344--69386
20
2.1
21
86
4
61
39
20
18
20
1.93
79135--79194
31
1.9
31
83
6
77
48
13
10
28
1.74
80058--80091
16
2.1
16
88
0
50
38
32
23
5
1.79
81289--81344
28
2.0
28
86
6
78
16
17
25
41
1.89
81302--81385
31
2.8
31
83
5
111
16
20
23
39
1.92
81550--81731
71
2.6
71
82
2
215
26
21
15
36
1.93
83393--83420
7
4.0
7
100
0
56
0
14
57
28
1.38
91697--91727
1
31.0
1
100
0
62
0
0
0
100
0.00
92006--92055
26
1.9
26
95
0
91
22
10
40
28
1.86
92519--92582
29
2.1
30
85
5
85
32
9
25
32
1.88
94062--94100
15
2.4
16
87
12
62
53
5
17
23
1.63
94306--94353
23
2.1
23
100
0
96
33
8
4
54
1.50
94395--94433
19
2.1
19
95
0
69
41
23
20
15
1.90
100214--100248
9
4.0
9
85
7
54
51
0
22
25
1.48
100210--100247
18
2.2
18
95
4
69
47
0
21
31
1.51

Tables:   1

The End!