Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021269.1 Corchorus olitorius cultivar O-4 contig21302, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18946
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34


Found at i:17553 original size:30 final size:30

Alignment explanation


    Indices: 17519--17577  Score: 109
    Period size: 30  Copynumber: 2.0  Consensus size: 30

      17509 CTTCTACCAT

                                          
      17519 TAACATAAATATAGATAAATGAAAATTTTG
          1 TAACATAAATATAGATAAATGAAAATTTTG

                  *                      
      17549 TAACATGAATATAGATAAATGAAAATTTT
          1 TAACATAAATATAGATAAATGAAAATTTT

      17578 TTACAAATTA


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  30   28  1.00

ACGTcount: A:0.53, C:0.03, G:0.10, T:0.34


Consensus pattern (30 bp):   
TAACATAAATATAGATAAATGAAAATTTTG

Found at i:18132 original size:17 final size:17

Alignment explanation


    Indices: 18097--18146  Score: 64
    Period size: 17  Copynumber: 2.9  Consensus size: 17

      18087 AAGATTTGAG

                         *   
      18097 AAACATTACTAGTAATA
          1 AAACATTACTAGTCATA

               *          *  
      18114 AAAGATTACTAGTCCTA
          1 AAACATTACTAGTCATA

              *             
      18131 AATCATTACTAGTCAT
          1 AAACATTACTAGTCAT

      18147 GTGATATGGG


Statistics
Matches: 27,  Mismatches: 6, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  17   27  1.00

ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32


Consensus pattern (17 bp):   
AAACATTACTAGTCATA
Done.