Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021270.1 Corchorus olitorius cultivar O-4 contig21303, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36252

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16278--16323
17
2.6
17
89
3
65
10
19
15
54
1.70
16280--16333
18
3.1
18
86
5
74
14
18
16
50
1.79
19157--19198
13
3.4
13
83
9
52
52
16
4
26
1.63
21213--21269
29
2.0
29
100
0
114
40
14
3
42
1.62
21324--21375
3
17.3
3
100
0
104
65
0
0
34
0.93
26016--26041
2
13.0
2
100
0
52
50
0
0
50
1.00
26648--26683
2
18.0
2
100
0
72
50
0
0
50
1.00
29614--29657
21
2.1
21
100
0
88
43
4
4
47
1.44
30517--30565
23
2.1
23
85
7
64
67
2
8
22
1.28
30527--30572
23
2.0
23
91
4
74
58
6
8
26
1.52
33155--33214
22
2.6
24
82
10
72
41
11
8
38
1.72
33257--33301
22
2.0
23
86
4
65
24
20
11
44
1.83
34010--34041
2
16.5
2
93
6
57
53
0
0
46
1.00

Tables:   1

The End!