Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021276.1 Corchorus olitorius cultivar O-4 contig21309, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52090

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1827--1877
23
2.2
24
89
3
77
41
21
29
7
1.81
3440--3765
163
2.0
163
95
1
582
39
12
11
35
1.80
5896--5946
24
2.1
25
85
3
68
17
7
3
70
1.27
14953--14978
13
2.0
13
100
0
52
15
0
30
53
1.42
15341--15382
15
2.7
15
92
3
66
64
16
7
11
1.48
16119--16144
11
2.4
11
100
0
52
69
7
15
7
1.35
20837--20887
24
2.1
25
85
10
70
17
5
3
72
1.20
21052--21087
13
2.6
14
91
4
56
30
19
16
33
1.94
24804--24837
2
17.0
2
93
0
59
47
0
0
52
1.00
28430--28465
17
2.2
17
90
5
56
13
16
0
69
1.19
41968--42001
5
6.6
5
96
3
59
20
17
0
61
1.34
42602--42659
21
2.8
21
71
10
55
53
3
5
37
1.40
46347--46429
22
3.8
21
73
17
64
57
1
2
38
1.19
46349--46397
25
2.0
25
84
8
64
59
0
0
40
0.98
47167--47206
21
1.9
21
89
0
62
40
7
15
37
1.75

Tables:   1

The End!