Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021277.1 Corchorus olitorius cultivar O-4 contig21310, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24895

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
750--824
28
2.7
27
83
8
80
33
18
12
36
1.88
5610--5660
27
1.9
26
88
4
75
68
0
0
31
0.90
10999--11191
22
8.8
22
74
4
156
40
11
13
33
1.81
10984--11081
44
2.2
44
81
0
115
38
12
13
35
1.82
11396--11473
22
3.5
22
91
5
113
39
14
14
32
1.85
11363--11541
44
4.0
44
75
5
137
34
13
16
34
1.89
11463--11542
22
3.6
22
81
0
88
31
15
12
41
1.84
12409--12526
38
3.0
38
86
3
146
39
1
9
49
1.45
12452--12521
20
3.3
22
72
11
74
37
2
8
51
1.47
12398--12485
38
2.5
34
74
15
88
43
1
10
45
1.45
12467--12538
20
3.5
20
70
10
65
33
5
6
54
1.51
12417--12538
41
3.0
41
88
3
169
37
3
8
50
1.48
12464--12553
41
2.2
41
85
0
117
34
8
5
51
1.57
13279--13362
42
2.0
40
93
4
141
51
8
2
38
1.45
13353--13399
25
1.9
25
95
4
87
29
6
8
55
1.55
17193--17233
20
2.1
19
90
4
64
41
7
9
41
1.66
17422--17454
4
8.5
4
86
6
50
75
0
0
24
0.80
20861--20903
22
2.0
22
95
0
77
23
20
9
46
1.79

Tables:   1

The End!