Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002128.1 Corchorus olitorius cultivar O-4 contig02128, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2307
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32


Found at i:2011 original size:20 final size:20

Alignment explanation


    Indices: 1982--2029  Score: 80
    Period size: 20  Copynumber: 2.5  Consensus size: 20

       1972 CTAACAAGAT

                        *       
       1982 CCCC-AATATGATGCCCCAC
          1 CCCCAAATATGAAGCCCCAC

                                
       2001 CCCCAAATATGAAGCCCCAC
          1 CCCCAAATATGAAGCCCCAC

                     
       2021 CCCCAAATA
          1 CCCCAAATA

       2030 CCTCAACCTC


Statistics
Matches: 27,  Mismatches: 1, Indels: 1
        0.93            0.03        0.03

Matches are distributed among these distances:
  19    4  0.15
  20   23  0.85

ACGTcount: A:0.33, C:0.46, G:0.08, T:0.12


Consensus pattern (20 bp):   
CCCCAAATATGAAGCCCCAC
Done.