Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021280.1 Corchorus olitorius cultivar O-4 contig21313, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5058
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.34


Found at i:4274 original size:12 final size:12

Alignment explanation


    Indices: 4242--4274  Score: 50
    Period size: 12  Copynumber: 2.8  Consensus size: 12

       4232 TTGGGTCCTT

                        
       4242 CCATTAATTGCA
          1 CCATTAATTGCA

                         
       4254 CC-TTGAATTGCA
          1 CCATT-AATTGCA

                     
       4266 CCATTAATT
          1 CCATTAATT

       4275 TTGCTGATAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 4
        0.83            0.00        0.17

Matches are distributed among these distances:
  11    2  0.11
  12   15  0.79
  13    2  0.11

ACGTcount: A:0.30, C:0.24, G:0.09, T:0.36


Consensus pattern (12 bp):   
CCATTAATTGCA
Done.