genome.fa.s21281.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021281.1 Corchorus olitorius cultivar O-4 contig21314, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86110

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35--73	2	19.5	2	100	0	78	51	0	0	48	1.00
10043--10099	5	11.2	5	96	3	105	61	0	0	38	0.96
10827--10882	22	2.5	22	82	0	67	42	16	16	25	1.87
10890--10933	21	2.0	23	86	8	65	38	25	15	20	1.92
10811--11068	87	3.0	87	86	1	329	39	18	15	25	1.90
11012--11126	58	2.0	58	91	0	185	40	17	15	26	1.90
11122--11165	21	2.0	23	91	8	74	40	27	13	18	1.88
10925--11214	145	2.0	145	96	0	535	40	18	15	25	1.91
11070--11301	87	2.7	87	93	2	376	38	20	16	24	1.92
11209--11250	21	1.9	23	90	9	70	40	23	19	16	1.91
15874--15950	27	2.8	27	82	11	86	37	6	14	41	1.71
19484--19522	20	2.0	20	85	10	53	28	23	28	20	1.99
19743--19807	28	2.3	28	94	0	112	3	44	4	47	1.39
24986--25025	21	1.9	21	84	0	53	47	7	0	45	1.31
26114--26160	21	2.1	22	84	7	60	48	4	10	36	1.57
28416--28487	31	2.3	31	81	11	92	34	19	26	19	1.96
31761--31849	43	2.1	43	97	0	169	28	21	10	40	1.85
35372--35404	12	2.7	13	86	13	52	45	9	24	21	1.80
41418--41571	74	2.0	76	95	5	276	40	7	20	31	1.80
44989--45034	22	2.1	22	100	0	92	30	17	21	30	1.96
46510--46590	40	2.0	40	100	0	162	25	29	12	32	1.92
59687--59771	30	2.8	30	85	1	107	14	10	30	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61532--61567	18	1.9	18	88	5	54	38	2	22	36	1.69
63346--63387	21	2.0	21	81	9	50	42	9	11	35	1.74
72616--72653	19	2.0	20	89	5	60	10	5	23	60	1.50
76348--76458	55	2.0	54	92	1	186	23	8	13	54	1.65
76618--76656	20	2.0	20	90	5	62	43	5	15	35	1.69
76914--76950	17	2.1	18	90	5	58	37	24	2	35	1.70
77228--77267	20	2.0	20	100	0	80	35	25	20	20	1.96
77963--78321	52	6.9	52	92	0	583	34	18	17	30	1.94
84621--84676	27	2.1	27	96	0	103	37	23	12	26	1.90

Tables:   1

The End!