Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021283.1 Corchorus olitorius cultivar O-4 contig21316, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82995

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66--121
29
2.0
28
89
3
85
28
8
21
41
1.83
329--398
36
1.9
36
91
0
113
21
10
8
60
1.55
908--1306
209
1.9
202
94
3
699
45
7
10
35
1.67
1433--1513
39
2.0
40
88
6
121
35
3
8
51
1.50
1761--1798
2
18.5
2
89
5
58
47
0
5
47
1.24
1996--2038
16
2.7
16
77
0
50
4
16
44
34
1.68
8069--8107
2
21.0
2
85
15
57
51
0
0
48
1.00
8765--8807
3
14.7
3
85
4
61
69
2
0
27
1.00
8759--8815
23
2.8
20
78
17
71
71
1
0
26
0.95
10351--10377
4
6.8
4
100
0
54
25
0
74
0
0.83
10914--11007
45
2.2
43
88
7
138
38
21
5
35
1.76
14626--14671
19
2.4
19
92
0
74
50
13
15
21
1.78
15237--15535
163
1.8
163
90
1
483
41
17
18
22
1.90
15578--15635
2
28.0
2
89
6
80
44
0
6
48
1.29
16794--17356
30
18.8
30
91
1
754
30
21
19
28
1.97
24462--24537
28
2.6
28
79
8
82
47
10
10
31
1.72
24490--24550
28
2.3
26
82
5
68
54
13
9
22
1.68
29207--29545
97
3.6
93
92
5
567
28
18
19
33
1.96
39393--39619
79
2.9
78
88
2
339
48
14
14
22
1.80
39382--39619
78
3.0
78
88
3
352
48
14
13
22
1.79
43355--43387
17
1.9
17
88
11
50
36
21
18
24
1.95
52932--53890
479
2.0
479
99
0
1909
37
20
13
28
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56496--56525
14
2.1
14
100
0
60
23
6
13
56
1.60
58657--58695
20
2.0
20
85
10
53
35
5
5
53
1.45
60433--60846
220
1.9
219
82
6
523
37
12
3
46
1.60
64909--64934
12
2.2
12
100
0
52
34
23
15
26
1.94
64980--65064
43
2.0
43
86
4
118
42
17
10
29
1.83

Tables:   1

The End!