Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021284.1 Corchorus olitorius cultivar O-4 contig21317, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14805

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
203--234
11
2.9
11
100
0
64
9
28
28
34
1.88
2387--2435
6
8.2
6
86
0
71
0
14
32
53
1.41
2637--2661
3
8.3
3
100
0
50
0
68
32
0
0.90
3167--3213
3
15.7
3
86
0
67
0
4
29
65
1.11
3403--3440
15
2.5
15
87
8
51
36
5
23
34
1.78
3619--3647
14
2.0
15
93
6
51
82
0
13
3
0.79
5131--5181
10
5.0
10
83
4
66
64
0
31
3
1.11
5133--5181
21
2.4
20
93
3
80
63
0
32
4
1.13
8088--8164
25
3.0
25
80
12
86
32
14
42
10
1.79
9231--9268
20
1.9
20
100
0
76
47
5
0
47
1.24
13804--13842
20
2.0
20
89
0
60
20
33
12
33
1.91
13942--13990
21
2.3
21
85
3
62
59
26
0
14
1.36
14436--14530
3
31.3
3
80
10
104
35
0
3
61
1.12
14608--14656
20
2.3
22
89
6
75
36
0
6
57
1.24

Tables:   1

The End!