genome.fa.s21296.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021296.1 Corchorus olitorius cultivar O-4 contig21329, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61030

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2111--2175	29	2.2	29	80	0	76	16	9	27	46	1.78
3395--3436	22	2.0	22	90	4	68	73	0	21	4	1.01
3396--3438	16	2.9	15	83	10	52	76	0	18	4	0.95
3394--3445	21	2.5	19	77	19	59	75	0	21	3	0.97
5043--5306	35	8.1	35	64	22	101	22	21	19	36	1.95
4990--5332	96	3.6	96	89	0	499	21	23	20	34	1.96
5364--5416	22	2.4	22	87	0	70	32	24	1	41	1.66
5385--5463	24	3.4	24	85	3	108	32	20	6	40	1.77
5491--5728	54	4.5	54	85	6	326	28	16	21	32	1.96
5640--5817	96	1.8	97	89	1	277	26	15	24	33	1.95
5894--6312	90	4.9	88	85	8	482	24	15	26	32	1.96
5976--6292	79	3.9	79	88	5	420	23	14	28	34	1.93
6411--6788	46	8.2	46	83	3	413	26	12	21	38	1.90
6688--6773	45	1.9	45	85	4	120	19	12	24	43	1.86
14576--14619	21	2.1	21	95	0	79	29	11	9	50	1.69
15856--16720	436	2.0	433	85	3	1159	42	17	13	25	1.87
21763--21947	89	2.1	89	87	4	266	50	15	2	31	1.58
22091--22931	438	1.9	440	85	3	1167	41	15	14	29	1.86
24649--24981	165	2.0	165	92	0	558	39	11	13	35	1.80
24986--25023	2	20.0	2	89	10	62	52	0	0	47	1.00
24979--25020	13	3.3	12	90	9	66	54	0	0	45	0.99
24979--25020	22	2.0	21	95	4	75	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25997--26027	1	31.0	1	100	0	62	0	0	0	100	0.00
29715--29764	1	50.0	1	87	0	73	0	6	0	94	0.33
35017--35041	13	1.9	13	100	0	50	48	16	8	28	1.74
37040--37079	21	1.9	21	85	10	55	35	22	22	20	1.96
37532--37865	40	8.4	39	79	6	298	38	20	24	16	1.93
37555--37858	79	3.8	78	80	8	346	37	21	24	17	1.94
37555--37862	119	2.6	118	87	4	431	37	21	24	16	1.93
39736--40152	40	10.7	38	81	10	377	38	22	22	16	1.93
39937--39996	31	1.9	31	93	0	102	38	25	25	11	1.89
39817--40035	71	3.0	71	83	8	224	38	22	22	15	1.93
39817--40119	151	2.0	151	86	1	419	37	22	22	17	1.93
39857--40078	111	2.0	111	88	1	329	37	22	23	16	1.93

Tables:   1

The End!