Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021302.1 Corchorus olitorius cultivar O-4 contig21335, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4404
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36


Found at i:2586 original size:16 final size:17

Alignment explanation


    Indices: 2559--2633  Score: 86
    Period size: 16  Copynumber: 4.6  Consensus size: 17

       2549 GTCGGGTTGA

                             
       2559 TCGGGTTCGGGTCATTT
          1 TCGGGTTCGGGTCATTT

                   *         
       2576 T-GGGTTTGGGTCATTT
          1 TCGGGTTCGGGTCATTT

                          *  
       2592 TCGGGTTCGGGTC-GTT
          1 TCGGGTTCGGGTCATTT

                *         *  
       2608 T-GGATTCGGGT-AATT
          1 TCGGGTTCGGGTCATTT

                       
       2623 TCGGGTTCGGG
          1 TCGGGTTCGGG

       2634 CATCCAAAAT


Statistics
Matches: 49,  Mismatches: 6, Indels: 7
        0.79            0.10        0.11

Matches are distributed among these distances:
  15   12  0.24
  16   26  0.53
  17   11  0.22

ACGTcount: A:0.07, C:0.13, G:0.40, T:0.40


Consensus pattern (17 bp):   
TCGGGTTCGGGTCATTT
Done.