Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021303.1 Corchorus olitorius cultivar O-4 contig21336, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 793

Length: 1323
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30


Found at i:278 original size:25 final size:25

Alignment explanation


    Indices: 242--289  Score: 87
    Period size: 25  Copynumber: 1.9  Consensus size: 25

        232 ATGCAATATT

                                     
        242 AAATTAGATTTGAGCTACATGAATG
          1 AAATTAGATTTGAGCTACATGAATG

                   *               
        267 AAATTAGCTTTGAGCTACATGAA
          1 AAATTAGATTTGAGCTACATGAA

        290 CGCAAAATAC


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   22  1.00

ACGTcount: A:0.40, C:0.10, G:0.19, T:0.31


Consensus pattern (25 bp):   
AAATTAGATTTGAGCTACATGAATG
Done.