Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021309.1 Corchorus olitorius cultivar O-4 contig21342, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12575
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:2565 original size:13 final size:13

Alignment explanation


    Indices: 2547--2574  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

       2537 GGGTTGCCGC

                         
       2547 CACCCTCTCTTTG
          1 CACCCTCTCTTTG

                         
       2560 CACCCTCTCTTTG
          1 CACCCTCTCTTTG

              
       2573 CA
          1 CA

       2575 AAGAGAGGGT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.11, C:0.46, G:0.07, T:0.36


Consensus pattern (13 bp):   
CACCCTCTCTTTG

Found at i:10447 original size:5 final size:6

Alignment explanation


    Indices: 10433--10471  Score: 51
    Period size: 6  Copynumber: 6.5  Consensus size: 6

      10423 TTGAATTCCT

                                     *     **            
      10433 AAAAGA AAAAGA AAAAGA AAAACA AAACTA AAAAGA AAA
          1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAA

      10472 TTCACATGTT


Statistics
Matches: 28,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.82, C:0.05, G:0.10, T:0.03


Consensus pattern (6 bp):   
AAAAGA

Done.