Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021310.1 Corchorus olitorius cultivar O-4 contig21343, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13016
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:9451 original size:76 final size:76

Alignment explanation


    Indices: 9353--9506  Score: 231
    Period size: 76  Copynumber: 2.0  Consensus size: 76

       9343 CTTATAAAAT

                          *                                                  
       9353 AGGGTTAAAATACATATAAAAATACCAAACAA-CATAGGAAAATGATCATAAAAATAGGGTCTAT
          1 AGGGTTAAAATACAAATAAAAATACCAAA-AAGCATAGGAAAATGATCATAAAAATAGGGTCTAT

               *        
       9417 TTTTGCTCAATC
         65 TTTGGCTCAATC

                                             *  *                            
       9429 AGGGTT-AAATCACAAATAAAAATACCAAAAAGTATCGGAAAATGATCATAAAAATAGGGTCTAT
          1 AGGGTTAAAAT-ACAAATAAAAATACCAAAAAGCATAGGAAAATGATCATAAAAATAGGGTCTAT

                    *   
       9493 TTTGGCTCGATC
         65 TTTGGCTCAATC

              
       9505 AG
          1 AG

       9507 ATCTCCTTCA


Statistics
Matches: 71,  Mismatches: 5, Indels: 4
        0.89            0.06        0.05

Matches are distributed among these distances:
  75    6  0.08
  76   65  0.92

ACGTcount: A:0.46, C:0.13, G:0.16, T:0.25


Consensus pattern (76 bp):   
AGGGTTAAAATACAAATAAAAATACCAAAAAGCATAGGAAAATGATCATAAAAATAGGGTCTATT
TTGGCTCAATC
Done.