Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021311.1 Corchorus olitorius cultivar O-4 contig21344, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3704
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.32


Found at i:2099 original size:19 final size:19

Alignment explanation


    Indices: 2049--2099  Score: 61
    Period size: 19  Copynumber: 2.7  Consensus size: 19

       2039 TGTGGGATTT

                               
       2049 TTAATAA-TAATTATTCAA
          1 TTAATAATTAATTATTCAA

              *              *  
       2067 TAAAATAATT-ATTATTTAA
          1 T-TAATAATTAATTATTCAA

                          
       2086 TTAATAATTAATTA
          1 TTAATAATTAATTA

       2100 ATTTCAGTCC


Statistics
Matches: 27,  Mismatches: 3, Indels: 5
        0.77            0.09        0.14

Matches are distributed among these distances:
  18    8  0.30
  19   18  0.67
  20    1  0.04

ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47


Consensus pattern (19 bp):   
TTAATAATTAATTATTCAA
Done.