Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021312.1 Corchorus olitorius cultivar O-4 contig21345, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9165
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31


Found at i:6920 original size:28 final size:27

Alignment explanation


    Indices: 6819--6920  Score: 159
    Period size: 27  Copynumber: 3.7  Consensus size: 27

       6809 CAACTTATAA

                         **   *        
       6819 TTGGTCATTTGCATGCTCGGGGGCATT
          1 TTGGTCATTTGCACACTCAGGGGCATT

                                       
       6846 TTGGTCATTTGCACACTCAGGGGCATT
          1 TTGGTCATTTGCACACTCAGGGGCATT

                       *               
       6873 TTGGTCATTTGTACACTCAGGGGCATT
          1 TTGGTCATTTGCACACTCAGGGGCATT

                                 
       6900 TTGGTCATTTTGCACACTCAG
          1 TTGGTCA-TTTGCACACTCAG

       6921 AGTTTTTCTT


Statistics
Matches: 69,  Mismatches: 5, Indels: 1
        0.92            0.07        0.01

Matches are distributed among these distances:
  27   57  0.83
  28   12  0.17

ACGTcount: A:0.17, C:0.21, G:0.26, T:0.36


Consensus pattern (27 bp):   
TTGGTCATTTGCACACTCAGGGGCATT
Done.