Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021313.1 Corchorus olitorius cultivar O-4 contig21346, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3205
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:709 original size:15 final size:16

Alignment explanation


    Indices: 679--717  Score: 62
    Period size: 16  Copynumber: 2.4  Consensus size: 16

        669 TTACTCTGCT

                            
        679 TTGTTTTCTAGTTTAA
          1 TTGTTTTCTAGTTTAA

                            
        695 TTGTTTTCT-GTTTAA
          1 TTGTTTTCTAGTTTAA

                    
        710 TTGCTTTT
          1 TTG-TTTT

        718 TGTCAATCTC


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  15    9  0.41
  16   13  0.59

ACGTcount: A:0.13, C:0.08, G:0.13, T:0.67


Consensus pattern (16 bp):   
TTGTTTTCTAGTTTAA
Done.