Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021316.1 Corchorus olitorius cultivar O-4 contig21349, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4284
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23


Found at i:2224 original size:21 final size:21

Alignment explanation


    Indices: 2176--2229  Score: 56
    Period size: 21  Copynumber: 2.6  Consensus size: 21

       2166 GAGAGGAAAT

                    *           *
       2176 CAGGCGCAAAGATGAAGAACT
          1 CAGGCGCAGAGATGAAGAACA

              *                   
       2197 CAAGCGCAGAGATGAAGAAGCA
          1 CAGGCGCAGAGATGAAGAA-CA

                   *    
       2219 C-GGCGCCGAGA
          1 CAGGCGCAGAGA

       2230 GGAGGCGACG


Statistics
Matches: 27,  Mismatches: 5, Indels: 2
        0.79            0.15        0.06

Matches are distributed among these distances:
  21   25  0.93
  22    2  0.07

ACGTcount: A:0.39, C:0.22, G:0.33, T:0.06


Consensus pattern (21 bp):   
CAGGCGCAGAGATGAAGAACA
Done.