Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002132.1 Corchorus olitorius cultivar O-4 contig02132, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 823

Length: 1372
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40


Found at i:44 original size:2 final size:2

Alignment explanation


    Indices: 37--90  Score: 90
    Period size: 2  Copynumber: 26.0  Consensus size: 2

         27 TGAACATCCA

                                                                            
         37 AT AT AT AT CAT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT -AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                          
         81 AT AT AT AT AT
          1 AT AT AT AT AT

         91 TATTTTTAGT


Statistics
Matches: 50,  Mismatches: 0, Indels: 4
        0.93            0.00        0.07

Matches are distributed among these distances:
   2   46  0.92
   3    4  0.08

ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.