Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021325.1 Corchorus olitorius cultivar O-4 contig21358, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5649
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:745 original size:13 final size:13

Alignment explanation


    Indices: 715--767  Score: 51
    Period size: 12  Copynumber: 4.4  Consensus size: 13

        705 CCCGTTGAGG

                         
        715 AAATG-TTT-TAT
          1 AAATGCTTTATAT

              *          
        726 AACTGCTTTATAT
          1 AAATGCTTTATAT

                         
        739 AAATGCTTTATA-
          1 AAATGCTTTATAT

                **       
        751 AAATATTTTA-AT
          1 AAATGCTTTATAT

                 
        763 AAATG
          1 AAATG

        768 TTTTGGGTGC


Statistics
Matches: 34,  Mismatches: 5, Indels: 5
        0.77            0.11        0.11

Matches are distributed among these distances:
  11    5  0.15
  12   15  0.44
  13   14  0.41

ACGTcount: A:0.42, C:0.06, G:0.08, T:0.45


Consensus pattern (13 bp):   
AAATGCTTTATAT

Found at i:5571 original size:36 final size:36

Alignment explanation


    Indices: 5524--5593  Score: 122
    Period size: 36  Copynumber: 1.9  Consensus size: 36

       5514 TTCAATAACC

                                *               
       5524 TTACACTTTTTGTAATTTTGGTTATCATATTTCTTA
          1 TTACACTTTTTGTAATTTTGATTATCATATTTCTTA

                 *                            
       5560 TTACATTTTTTGTAATTTTGATTATCATATTTCT
          1 TTACACTTTTTGTAATTTTGATTATCATATTTCT

       5594 CCAAAATCTC


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  36   32  1.00

ACGTcount: A:0.23, C:0.10, G:0.07, T:0.60


Consensus pattern (36 bp):   
TTACACTTTTTGTAATTTTGATTATCATATTTCTTA
Done.