Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021328.1 Corchorus olitorius cultivar O-4 contig21361, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64066

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
896--936
19
2.2
19
86
0
55
60
19
7
12
1.54
1989--2022
15
2.3
15
90
5
52
2
29
0
67
1.05
10267--10291
13
1.9
13
100
0
50
20
0
0
80
0.72
11767--11849
2
44.5
2
71
13
52
60
0
0
39
0.97
11768--11849
34
2.4
34
84
11
107
60
0
0
39
0.96
11779--11849
9
8.0
9
77
17
53
60
0
0
39
0.97
17290--17365
40
1.9
40
94
0
134
44
3
15
35
1.65
19339--19363
2
12.5
2
100
0
50
52
0
0
48
1.00
27334--27394
18
3.3
18
65
4
50
59
16
16
8
1.60
27308--27410
37
2.8
37
85
1
136
51
15
22
10
1.74
28236--28451
58
3.7
58
93
1
360
25
14
16
43
1.86
28695--28860
29
5.8
28
85
2
206
19
17
24
38
1.93
39904--39982
40
2.0
38
80
11
88
5
22
0
72
1.04
39920--40005
25
3.5
25
74
19
83
2
23
0
74
0.93
39934--40010
15
5.1
15
79
13
70
1
24
0
74
0.90
39934--40015
7
10.5
8
75
25
54
1
24
0
74
0.89
39924--39998
5
14.8
5
76
6
71
2
21
0
76
0.92
42457--42522
31
2.1
32
94
2
116
40
22
9
27
1.84
48449--48603
27
5.7
27
92
2
222
38
21
16
23
1.93
50356--50385
11
2.7
11
94
0
51
36
10
13
40
1.78
55413--55453
22
2.0
21
90
9
66
58
19
0
21
1.39

Tables:   1

The End!