Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021334.1 Corchorus olitorius cultivar O-4 contig21367, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55778

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1312--1500
41
4.6
41
86
3
229
49
17
13
20
1.79
1291--1500
81
2.6
81
81
6
210
49
17
13
20
1.79
1333--1487
81
1.9
83
86
2
224
50
16
12
20
1.76
1578--2165
194
3.0
194
95
0
1050
29
26
16
27
1.97
4692--5110
29
14.4
29
73
11
243
42
21
18
18
1.90
4895--5106
116
1.8
115
82
6
275
42
21
18
16
1.89
7300--7345
22
2.1
22
100
0
92
17
4
13
65
1.42
17729--17777
15
3.3
15
88
0
71
18
24
14
42
1.87
18595--18717
48
2.6
47
83
6
140
52
7
12
27
1.65
20765--20800
19
1.9
18
88
5
54
41
2
22
33
1.68
21401--21437
18
2.0
19
94
5
67
10
13
10
64
1.49
24817--24843
14
1.9
14
100
0
54
66
7
11
14
1.43
27871--27901
2
15.5
2
100
0
62
48
0
0
51
1.00
28105--28147
4
10.8
4
87
9
52
51
16
0
32
1.45
32993--33129
47
2.9
47
82
3
161
8
26
18
45
1.78
33085--33154
29
2.4
29
87
0
104
11
28
17
42
1.83
33038--33188
76
2.0
76
86
2
214
9
29
16
44
1.80
33164--33319
57
2.7
57
88
3
215
10
25
17
46
1.79
35785--35818
11
3.1
11
95
0
59
0
29
52
17
1.45
40307--40382
16
4.8
15
73
10
62
5
11
34
48
1.62
42331--42360
15
2.1
15
93
6
53
66
6
13
13
1.43
43350--43962
22
28.3
21
66
15
191
35
17
9
37
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43650--43808
82
1.9
82
84
1
210
34
17
9
38
1.82
43894--44295
201
2.0
200
95
2
718
36
18
7
37
1.80
44223--44314
41
2.2
43
80
7
100
41
15
6
36
1.73
44296--44391
22
4.4
22
75
7
88
33
15
12
38
1.85
44286--44420
66
2.0
66
81
8
159
36
14
11
37
1.82
47690--47751
27
2.3
26
84
13
74
50
1
6
41
1.38
48219--48252
17
2.0
17
88
0
50
64
0
5
29
1.17
50032--50176
72
2.0
72
100
0
290
33
16
11
38
1.84
52910--53357
124
3.6
125
80
7
523
37
17
16
28
1.91
54270--54327
30
1.9
30
100
0
116
34
10
18
36
1.85

Tables:   1

The End!