Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021340.1 Corchorus olitorius cultivar O-4 contig21373, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7236
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35


Found at i:1471 original size:2 final size:2

Alignment explanation


    Indices: 1464--1492  Score: 51
    Period size: 2  Copynumber: 15.0  Consensus size: 2

       1454 TTAAATTATT

                                                        
       1464 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       1493 AGATAACAGC


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   1    1  0.04
   2   25  0.96

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:3942 original size:2 final size:2

Alignment explanation


    Indices: 3902--3930  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

       3892 AATAATTCAA

                                                       
       3902 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       3931 CCATAGTATA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT
Done.